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The 6 Best Gluten-Free Restaurants in Mission Valley

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By Gluten Free Eats' gluten-free community

Updated May 2025

01
The Cheesecake Factory

The Cheesecake Factory

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7067 Friars Rd, San Diego, CA 92108, USA

BreakfastLunchDinnerBrunchBakeryOpen LateDeliveryTake AwayOutdoor SeatingKid FriendlyDessertsRestaurant
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Went here for lunch today. I usually avoid popular restaurants like this because of the long wait times. But, today a Thursday around 3PM wasn't bad--there was no wait. I usually try to avoid pastas but decided to give one a try today. I usually go for Alfredo because they are safe. I ordered the Da Vinci which is a creamy mushroom pasta with chicken. It was very savory and good I would recommend it. Got dessert had to get a cheesecake. You can't go wrong with any of the flavors today I had a chocolate one but I want to go back for a lime coconut one. They did have 2 no sugar added lower calorie options for the cheesecake which is great for people who are trying to eat less sugar. "Low-Licious Cheesecake. Low Carb, No Sugar Added and Gluten Free Cheesecake."

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02
BJ's Restaurant & Brewhouse

BJ's Restaurant & Brewhouse

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1370 Frazee Rd, San Diego, CA 92108, USA

BreakfastLunchDinnerBrunchOpen LateDeliveryTake AwayOutdoor SeatingKid FriendlyBarRestaurant
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Dave Lemox

Between appointments helping people with their Medicare, I had lunch with a friend of 40+ years. For health reasons, I have to eat gluten-free. I ordered their bacon cheeseburger with fries. The burger was great, but like most GF breads, it fell apart when I tried to pick it up. Knife and fork the rest of the way. The fries were great, and so was the iced tea. As for service, our server was either new or too shy to speak audibly.

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03
Mendocino Farms

Mendocino Farms

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1652 Camino Del Rio N, San Diego, CA 92108, USA

LunchDinnerSandwichesDeliveryTake AwayOutdoor SeatingKid FriendlyBread ItemsRestaurant
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Marsha Weddle

First time there and plan to go back! Had a gluten free sandwich and it was soooo good!

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04
Bunz

Bunz

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475 Hotel Cir S, San Diego, CA 92108, USA

BreakfastLunchDinnerAmericanDeliveryTake AwayPet FriendlyOutdoor SeatingKid FriendlyBread ItemsRestaurantBurgers
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Traci Wilkerson Steckel

Over the last 7 years, we have been here about 5 times. I would say that we have always had very good service, and the food has always been good too! I have dietary restrictions as I am a vegetarian by choice, but also have Celiac Disease and need to order gluten-free. I was very happy to see that this last time we visited, they had a gluten-free bun on the menu. I also like that I could order sparkling wine and that there is a pretty decent adult beverage menu. This time we went to eat there, we took 7 of the volunteers for my nonprofit Traci's Paws, to eat after they volunteered the late shift for our recent charity event, and they all really enjoyed it. It was the first time for all 7 of them to dine here, and I think that many of them will be back. While this restaurant is probably here for the hotels that are within walking distance, I really like that it feels like it is off of the beating path and like a hidden gem that I can sneak off to when I want a really good burger that feels like my parents made, and not "fast food".

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05
Which Wich Superior Sandwiches

Which Wich Superior Sandwiches

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7610 Hazard Center Dr #501, San Diego, CA 92108, USA

LunchDinnerBrunchSandwichesDeliveryTake AwayOutdoor SeatingKid FriendlyBread ItemsRestaurantBreakfast
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