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The 50 Best Gluten-Free Bakeries in San Diego

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By Gluten Free Eats' gluten-free community

Updated Jun 2025

01
Starry Lane Bakery

Starry Lane Bakery

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100% Dedicated Gluten-Free

3925 Fourth Ave, San Diego, CA 92103, USA

GF OptionsAllergan FriendlyDedicated GF MenuVegan Friendly100% Gluten FreeCeliac FriendlyVegan Options100% GF RestaurantBakeryDedicated GF Kitchen SpaceAllergen FriendlyBreakfastBrunchDairy Free OptionsKid FriendlyTake AwayVegetarian OptionsSeparate OvenKnowledgeable StaffBread ItemsDessertsCasual100% GF
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Kaelie Rose

Their baked goods are amazing!!! I visit everytime I am in San Diego

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Dedicated gluten-free menu
02
Chani's Donuts (Chanis)

Chani's Donuts (Chanis)

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100% Dedicated Gluten-Free

5250 Murphy Canyon Rd Suite 118, San Diego, CA 92123, USA

CasualKid FriendlyTake AwayDessertsAllergen FriendlyKnowledgeable StaffDedicated GF FryerGF OptionsGF Options Marked on MenuBakery100% GFCeliac FriendlyBreakfastVeganDeliveryDonutsBrunchOutdoor Seating
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Okay but why are these so dang good??? I was craving donuts at 1am and decided to search San Diego on Google maps for some Gluten Free options and I am SO HAPPY I found this place. I made it just in time before they closed and asked for the surprise me special. Every flavor option I got was to die for. Crunchy, yet soft donuts, delicious flavors and will be my new cheat sweets 🤤 Free donut as you walk in and the prices are very fair and manageable I believe the strawberry one was my favorite but also can't go wrong with powdered. They were devoured in 10 minutes. The two ladies working at the time were so friendly and explained the menu to me and all the options available GO HERE NOW and try out these donuts I PROMISE they will be better than you think! Can't wait to go back! 🤤🤤🤤

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Dedicated gluten-free menu
03
Phatties Bake Shop

Phatties Bake Shop

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100% Dedicated Gluten-Free

4143 Voltaire St, San Diego, CA 92107, USA

CasualKid FriendlyTake AwayDessertsVegan OptionsGF Options Marked on MenuGF OptionsCeliac FriendlyBakeryBread ItemsBagelsSandwichesAllergen FriendlyDairy FreeCafeBrunchBreakfastLunchVegetarianOutdoor SeatingDeliveryPet Friendly100% GF
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04
The Baked Bear

The Baked Bear

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Celiac friendly

4516 Mission Blvd, San Diego, CA 92109, USA

CasualKid FriendlyTake AwayDeliveryDessertsKnowledgeable StaffCeliac FriendlyIce CreamBakery
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Lori Cross Schotten

Being gluten free, desserts are always a challenge. This was the best GF chocolate chip cookie and GF ice cream I've ever had. They had so many choices too!

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Gluten-free options are marked
05
The Deli Llama

The Deli Llama

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Accommodating

3702 Fifth Ave, San Diego, CA 92103, USA

GF OptionsLunchAllergen FriendlyBrunchDairy Free OptionsDeliveryPet FriendlyKid FriendlyOutdoor SeatingTake AwayVegan OptionsVegetarian OptionsBread ItemsSandwichesCasualBakeryRestaurant
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makenna hopwood

the sandwiches are delicious, staff is so so nice, and they have multiple gluten free options. big fan!

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GF options marked