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The 50 Best Gluten-Free Bakeries in San Diego

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By Gluten Free Eats' gluten-free community

Updated Apr 2025

01
Starry Lane Bakery

Starry Lane Bakery

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100% Dedicated Gluten-Free

3925 Fourth Ave, San Diego, CA 92103, USA

GF OptionsAllergan FriendlyDedicated GF MenuVegan Friendly100% Gluten FreeCeliac FriendlyVegan Options100% GF RestaurantBakeryDedicated GF Kitchen SpaceAllergen FriendlyBreakfastBrunchDairy Free OptionsKid FriendlyTake AwayVegetarian OptionsSeparate OvenKnowledgeable StaffBread ItemsDessertsCasual100% GF
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Kaelie Rose

Their baked goods are amazing!!! I visit everytime I am in San Diego

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Dedicated gluten-free menu
02
Chani's Donuts (Chanis)

Chani's Donuts (Chanis)

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100% Dedicated Gluten-Free

5250 Murphy Canyon Rd Suite 118, San Diego, CA 92123, USA

CasualKid FriendlyTake AwayDessertsAllergen FriendlyKnowledgeable StaffDedicated GF FryerGF OptionsGF Options Marked on MenuBakery100% GFCeliac FriendlyBreakfastVeganDeliveryDonutsBrunchOutdoor Seating
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Lakisha Burrise

Amazing !!, I’m so happy to finally have gluten free donuts in San Diego.

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Dedicated gluten-free menu
03
Phatties Bake Shop

Phatties Bake Shop

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Celiac friendly

4143 Voltaire St, San Diego, CA 92107, USA

CasualKid FriendlyTake AwayDessertsVegan OptionsGF Options Marked on MenuGF OptionsCeliac FriendlyBakeryBread ItemsBagelsSandwichesAllergen FriendlyDairy FreeCafeBrunchBreakfastLunchVegetarianOutdoor SeatingDeliveryPet Friendly
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04
The Baked Bear

The Baked Bear

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Celiac friendly

4516 Mission Blvd, San Diego, CA 92109, USA

CasualKid FriendlyTake AwayDeliveryDessertsKnowledgeable StaffCeliac FriendlyIce CreamBakery
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Lori Cross Schotten

Being gluten free, desserts are always a challenge. This was the best GF chocolate chip cookie and GF ice cream I've ever had. They had so many choices too!

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Gluten-free options are marked
05
The Deli Llama

The Deli Llama

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Accommodating

3702 Fifth Ave, San Diego, CA 92103, USA

GF OptionsLunchAllergen FriendlyBrunchDairy Free OptionsDeliveryPet FriendlyKid FriendlyOutdoor SeatingTake AwayVegan OptionsVegetarian OptionsBread ItemsSandwichesCasualBakeryRestaurant
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makenna hopwood

the sandwiches are delicious, staff is so so nice, and they have multiple gluten free options. big fan!

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GF options marked