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The 18 Best Gluten-Free Grocery Stores in San Diego

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By Gluten Free Eats' gluten-free community

Updated Apr 2025

01
Sprouts Farmers Market

Sprouts Farmers Market

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Accommodating

4175 Park Blvd, San Diego, CA 92103, USA

GF OptionsOrganic FoodSandwichesDeliveryGrocery Store
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Laila Barnett

Wow so this store has so much more organic and glutenfree products available than most sprouts. The staffis super friendly patient and helpful

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02
Keil's Fresh Food Store

Keil's Fresh Food Store

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7403 Jackson Dr, San Diego, CA 92119, USA

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Ella Ellington

Great gluten free selection, and variety of sauces, overall clean, but unfriendly cashier named Toni. Don’t work at the front of a store if you don’t like people. Flung my bakery item at me and said “carry the cake” and was one of the only things she said the whole time.

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03
Whole Foods Market

Whole Foods Market

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8825 Villa La Jolla Dr, La Jolla, CA 92037, USA

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Shauna Farrell

Gluten free options at the salad bar. Staff was very helpful in finding me gluten free bakery desserts.

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04
Matteo

Matteo

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Accommodating

3015 Juniper St, San Diego, CA 92104, USA

BrunchGF OptionsBreakfastDairy Free OptionsDinnerPet FriendlyLunchOutdoor SeatingTake AwayVegetarian OptionsVegan OptionsBread ItemsSandwichesBakeryDeliveryKid FriendlyRestaurantGrocery Store
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Leighton Jones

Went here for a lunch this past Monday. We had the best chopped salads and the Bloody Mary is so cool. My husband has celiac disease and the salads were perfect for him—no problems. Recommend this place for a cute indoor or outdoor experience in South Park!

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05
Jimbo’s

Jimbo’s

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12841 El Camino Real Suite 100, San Diego, CA 92130, USA

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Teri Birch

Jimbo’s has the freshest produce, and the best tasting orange juice anywhere. It’s always a pleasant shopping trip, and I can usually find everything I want with ease. I love the GF tiramisu, it’s not a typical grainy gluten free deli dessert, it’s quality!

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