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The 50 Best Gluten-Free Breakfast Spots in Japan

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By Gluten Free Eats' gluten-free community

Updated Apr 2025

01
Shochikuen Cafe

Shochikuen Cafe

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100% Dedicated Gluten-Free

2-chōme-7-6 Nishiasakusa, Taito City, Tokyo 111-0035, Japan

PizzaVegan OptionsGF OptionsAllergen FriendlyBakeryCoffeeDairy Free OptionsKid FriendlyLunchTake AwayVegetarian OptionsBread ItemsBurgersDesserts100% GFCeliac FriendlyBreakfastDinnerBrunchDeliveryPet Friendly
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Catherine Serpell

It was so good I went back twice in one day! Such a cosy little cafe with really delicious food. I enjoyed a mango smoothie, the iconic rainbow cake, a matcha tiramisu and the tamago burger. Everything exceeded my expectations. The rainbow cake was the perfect level of sweetness (often I find gluten free foods are overly sweet and not enjoyable). My favourite was definitely the burger, the tofu skin texture and flavour was soooo tasty!! Highly highly recommend to anyone looking for yummy GF and vegan food 🤗

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Dedicated gluten-free menu
02
waco crepes

waco crepes

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100% Dedicated Gluten-Free

6-chōme-355-1 Miyagawasuji, Higashiyama Ward, Kyoto, 605-0801, Japan

Dedicated GF MenuVegan Friendly100% Gluten FreeVegetarian OptionsWaffles / CrepesBeerDessertsLunchCafeBrunchAllergen FriendlyDairy FreeOutdoor SeatingTake AwayKid FriendlyCeliac Friendly100% GFDedicated GF FryerBreakfastDeliveryRestaurant
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Mel Griffin

Amazing. We ordered two savory and two sweet crepes and their matcha lattes. Everything was delicious and the staff is so friendly. The place is small so go early for seats.

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Dedicated gluten-free menu
03
ONDEN House - Gluten-Free and Guilt-Free Cafè -

ONDEN House - Gluten-Free and Guilt-Free Cafè -

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100% Dedicated Gluten-Free

5-chōme-16-5 Jingūmae, Shibuya City, Tokyo 150-0001, Japan

GF Options100% GFCeliac FriendlySeparate GF MenuSeparate OvenKnowledgeable StaffDedicated GF Kitchen SpaceBakeryLunchBread ItemsPizzaDessertsBreakfastDinnerBrunchTake AwayPet FriendlyKid Friendly
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Bernhard Wohlmacher

Went there twice during our Tokyo stay and will come again for sure. They are super friendly and gluten-free only, also vegan available and allergens are clearly marked, so super safe for anyone struggling with allergens. The food is absolutely amazing and super affordable, too! The best curry buns I had in Tokyo, banana muffins are also a must-try!

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04
CHOICE

CHOICE

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100% Dedicated Gluten-Free

Japan, 〒605-0009 Kyoto, Higashiyama Ward, Ōhashichō, 89−1 鈴木形成外科ビル 1F

Celiac FriendlyVegan OptionsGF OptionsTake AwayDeliveryCasualAllergen FriendlyBreakfastBrunchCoffeeDairy Free OptionsLunchVegetarian OptionsKnowledgeable StaffBurgersDessertsPancakesPizza100% GFPastaDinner
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Gounosuek Izumi

Great vegan & gluten free food! Everything was amazing!

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Dedicated gluten-free menu
05
MOON and BACK Ramen Bar & Brunch Cafe

MOON and BACK Ramen Bar & Brunch Cafe

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Celiac friendly

585 Takamiyachō, Nakagyo Ward, Kyoto, 604-8056, Japan

BreakfastLunchDinnerBrunchVeganOpen LateCafeAsianDeliveryTake AwayKid FriendlyVegetarianCeliac Friendly
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Bernadette Bolan

Lots of ramen options - including vegan and gluten free! Great cocktails. Super cute space!

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GF options marked